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基于運(yùn)動恢復(fù)結(jié)構(gòu)的玉米植株三維重建與性狀提取
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國家自然科學(xué)基金面上項(xiàng)目(31770397)、國家自然科學(xué)基金項(xiàng)目(31701317)和國家自然科學(xué)基金青年基金項(xiàng)目(31601216)


Three-dimensional Maize Plants Reconstruction and Traits Extraction Based on Structure from Motion
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    摘要:

    針對傳統(tǒng)的玉米植株性狀測量方法存在主觀性強(qiáng),、勞動強(qiáng)度大,、有損傷等問題,提出了基于運(yùn)動恢復(fù)結(jié)構(gòu)(Structure from motion,SfM)的戶外玉米植株三維重建方法,,并提取了株高、單株最小包圍盒體積,、莖粗,、葉面積、葉片數(shù),、葉夾角等11個性狀參數(shù),。采用前期研制的小車,在戶外采集不同視角下的玉米植株圖像(采集間距為5~6cm),,基于SfM算法獲取玉米植株三維點(diǎn)云,;運(yùn)用直通濾波,、圓柱擬合和條件歐氏聚類算法自動分割單株、莖稈和葉片等點(diǎn)云數(shù)據(jù),,基于距離最值遍歷,、三角面片化等算法實(shí)現(xiàn)株高、莖粗,、葉面積等11個性狀的準(zhǔn)確,、無損測量。結(jié)果表明,,與人工測量值相比,,測得的株高、莖粗和葉面積的平均絕對百分比誤差分別為3.163%,、4.760%和19.102%,,均方根誤差分別為3.557cm、1.540mm,、48.163cm2,,決定系數(shù)分別為0.970、0.842,、0.901,。研究表明,本文方法適用于作物表型戶外測量,,為表型研究提供了一種新的作物表型戶外測量方法,,同時還證明,株高和單株最小包圍盒體積可以顯著區(qū)分低地上部生物量玉米植株和高地上部生物量玉米植株,。

    Abstract:

    Maize is one of the most widely distributed crops in the world, ranking third only to wheat and rice. The plant height, stalk diameter and leaf area of maize are closely related to its yield, the leaf projection area and leaf stem angle have an direct effect on utilization of light energy to maize plants, the number of leaves is the indicator of the overground part biomass, the parameters such as minimum enveloping box volume of single leaf, leaf perimeter, leaf projection width, leaf projection length and so on directly affect the spatial distribution of leaves, therefore, dynamic monitoring of these traits is particularly important. However, the traditional measurement of these traits is timeconsuming, costly, subjective and destructive. To achieve the dynamic, rapid, accurate and nondestructive outdoor measurement of maize plant height, stalk diameter, leaf area, the number of leaves, leaf stem angle and so on, threedimensional (3D) models of tassel stage maize plants were reconstructed by using structure from motion (SfM) algorithm. An autonomous crawler phenotyping robot was used for acquiring multiview maize plants images along the maize crop rows outdoors. The robot could work continuously four hours at speed of 0.1m/s and would acquire about 700 stable images for a single camera. The 3D point cloud data were obtained using the multiview images in the Visual SFM software. The 3D point cloud data were preprocessed and some morphological traits such as maize plant height, minimum enveloping box volume of single plant, stalk diameter, the number of leaves, leaf perimeter, leaf area, minimum enveloping box volume of single leaf, leaf projection area, leaf projection width, leaf projection length and leaf stem angle were extracted in the Visual Studio 2013 plus PCL platform. Compared with the manual measurement, the mean absolute percentage errors (MAPE) for plant height, stalk diameter and leaf area were 3.163%, 4.760% and 19.102%, respectively. The root mean square error (RMSE) for plant height, stalk diameter and leaf area were 3.557cm, 1.540mm and 48.163cm2, respectively. The R2 for plant height, stalk diameter and leaf area were 0.970, 0.842 and 0.901, respectively. The results showed that 3D reconstruction method based on SfM algorithm was suitable for outdoor measurement. In addition, the maize plants were divided into low overground part biomass maize and high overground part biomass maize by the fresh weight of the overground part plant, meanwhile, the plant trait such as height, minimum enveloping box volume of single plant, stalk diameter and the number of leaves were extracted with segmented point cloud data to calculate the P value by single factor analysis of variance. The measured P values were 0.0003, 0.0004, 0.3170 and 0.2415, respectively, and the results proved that the traits of plant height and minimum enveloping box volume of single plant were able to distinguish the low overground part biomass maize and high overground part biomass maize evidently. The research result provided scientific researchers and crop breeders a new phenotyping method for measuring crop traits to some extent.

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梁秀英,周風(fēng)燃,陳歡,梁博,許錫晨,楊萬能.基于運(yùn)動恢復(fù)結(jié)構(gòu)的玉米植株三維重建與性狀提取[J].農(nóng)業(yè)機(jī)械學(xué)報,2020,51(6):209-219. LIANG Xiuying, ZHOU Fengran, CHEN Huan, LIANG Bo, XU Xichen, YANG Wanneng. Three-dimensional Maize Plants Reconstruction and Traits Extraction Based on Structure from Motion[J]. Transactions of the Chinese Society for Agricultural Machinery,2020,51(6):209-219.

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  • 收稿日期:2019-10-20
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  • 在線發(fā)布日期: 2020-06-10
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